Add gene ontology to list
Add cis eQTL data to list
Add GWAS data from GRASP to list
Add allele specific expression data to list
Add data from Maurano et. al. Nat Genet. 2015 regarding allele specific DNAse hypersensitivty.
Add transcript information to list
Add antisense transcript information to list
Add GWAS data from NHGRI-EBI GWAS Catalog to list
Add RNAsequencing expression data list
Add gene location information to list
Build empty list using gene names.
Adds number of titles from Pubmed to list
Add results from protein truncating variant algorithm made available by GTEx
Build empty list using genomic region.
Add results from SqtlSeek splicingQTL algorithm to list
exMgl
Add results from Altrans splicingQTL algorithm to list
exampleMgl
Add trans eQTL data to list
Build empty list using ENSG gene ids.
Convert chr_pos to rs id
Plot GTEx AEI ratios
Returns a list with Gene Ontology data
Returns an individual element for each gene
Filter Dnase (Maurano) Results
Returns names of elements that are filled in
Tests pairwise co-expression for normalized expression data
Returns gene names with a given GO term
Tests pairwise co-expression between user defined transcripts in specified tissues
Fix genes with missing names
Returns gene names with a given phenotype
Returns information for SNPs that appear in two user-defined groups for a given gene
Returns a summary table of the number of eQTL and GWAS SNPs for each gene
Make SNP list
Make list of GWAS-based traits
Idenify genes with missing names
Returns gene names with a given SNP
Returns SNPs that appear in two user-defined groups for a given gene
Returns SNPs identified as cis-eQTLs for more than one gene