ae2bioc
converts local MAGE-TAB files into a AffyBatch, an
ExpressionSet or a NChannelSet.
ae2bioc(mageFiles, dataCols = NULL, drop = TRUE)
getAE
function. Containing the following elements:
AffyBatch
,
ExpressionSet
or
NChannelSet
with the raw expression
values in the 'assayData' of the object, the information
contained in the sdrf file in the 'phenoData', the adf file content in
the 'featureData' and the idf file content in the 'experimentData'.If several array designs are used in the dataset, the output is a
list with an object for each array design.
ArrayExpress
,
queryAE
,
getAE
# An example can be found in the help of the getAE function.
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