taxize (version 0.2.0)

col_classification: Search Catalogue of Life for taxonomic classifications.

Description

THIS FUNCTION IS DEPRECATED.

Usage

col_classification(name = NULL, id = NULL, format = NULL, start = NULL,
  checklist = NULL)

Arguments

name

The string to search for. Only exact matches found the name given will be returned, unless one or wildcards are included in the search string. An * (asterisk) character denotes a wildcard; a character may also be used. The name must be at least 3

id

The record ID of the specific record to return (only for scientific names of species or infraspecific taxa)

format

format of the results returned. Valid values are format=xml and format=php; if the format parameter is omitted, the results are returned in the default XML format. If format=php then results are returned as a PHP array in serialized string format,

start

The first record to return. If omitted, the results are returned from the first record (start=0). This is useful if the total number of results is larger than the maximum number of results returned by a single Web service query (currently the maxi

checklist

The year of the checklist to query, if you want a specific year's checklist instead of the lastest as default (numeric).

Value

• A list of data.frame's.

Details

You must provide one of name or id. The other parameters (format and start) are optional.

Examples

# A basic example
col_classification(name="Apis")

# An example where there is no classification
col_classification(id=11935941)

# Use a specific year's checklist
col_classification(name="Apis", checklist="2012")
col_classification(name="Apis", checklist="2009")

# Pass in many names or many id's
out <- col_classification(name=c("Buteo","Apis","Accipiter","asdf"),
   checklist="2012")
out$Apis # get just the output you want
ldply(out) # or combine to one data.frame

# Use get_colid to pass in ID directly
col_classification(id=get_colid(sciname='Puma concolor'))