shallot (version 0.4.1)

plot.partition: Confidence and Exemplar Plotting

Description

Functions to produce confidence plots (e.g., heatmaps of pairwise probabilities of clustering) and exemplar plots.

Usage

confidence(pairwise.probabilities, partition)
# S3 method for shallot.confidence
plot(x, partition = NULL, data = NULL,
  show.labels = length(x$partition) 

Arguments

partition

A vector of cluster labels, or NULL.

x

An object of class shallot.confidence.

pairwise.probabilities

An object of class shallot.pairwiseProbability, or NULL.

data

The data from which the distances were computed.

show.labels

Show the items names be shown in the plot?

...

Currently ignored.

Value

The confidence function outputs an object of class shallot.confidence being a list of confidence information.

See Also

sample.partitions, process.samples, estimate.partition

Examples

# NOT RUN {
example(shallot)
# }