qcplot

controlTypes

An object of class <code><links4class>MethyLumiSet</links4class></code> or <code><links4class>MethyLumiQC</links4class></code>

object

A single character value representing the bead type to plot from the quality control data.  The available types are accessible via the <code><a href="/link/controlTypes?package=methylumi&version=2.18.2" rd-options="" data-mini-rdoc="methylumi::controlTypes">controlTypes</a></code> method.

controltype

The <code>qcplot</code> function simply generates a plot of the control probe information for a given <code>controlType</code>.

hplot

This package provides classes for holding and manipulating
	     Illumina methylation data.  Based on eSet, it can contain MIAME
	     information, sample information, feature information, and
	     multiple matrices of data.  An "intelligent" import function,
	     methylumiR can read the Illumina text files and create a
	     MethyLumiSet. methylumIDAT can directly read raw IDAT files from 
       HumanMethylation27 and HumanMethylation450 microarrays.  Normalization,
       background correction, and quality control features for GoldenGate,
       Infinium, and Infinium HD arrays are also included.

Sean Davis

methylumi

Handle Illumina methylation data

qcplot function

An object of class <code><linkS4class>MethyLumiSet</linkS4class></code> or <code><linkS4class>MethyLumiQC</linkS4class></code>

A single character value representing the bead type to plot from the quality control data.  The available types are accessible via the <code><a href="controlTypes" rd-options="">controlTypes</a></code> method.

qcplot: Methods for dealing with control data for Illumina methylation data.

Description

Usage

Arguments

Details

See Also

Examples