Usage
createRNAinteractFromFiles(name = "anonymous",
filePlatelist = "Platelist.txt",
fileReagents = "Reagents.txt",
fileTargets = "Targets.txt",
fileTemplateDesign = "TemplateDesign.txt",
fileQueryDesign = "QueryDesign.txt",
path = ".",
pdim = NULL,
Transformation = "log2")
Arguments
name
A name for the screen.
filePlatelist
The filename of the text file containing the plate list.
fileReagents
The filename of the text file containing the reagent annotation.
fileTargets
The filename of the text file containing the target annotation.
fileTemplateDesign
The filename of the text file containing the template design.
fileQueryDesign
The filename of the text file containing the query design.
path
The system directory were the textfiles filePlatelist, fileReagents, fileTargets, fileTemplateDesign, and fileQueryDesign are located.
pdim
The dimensions of the multi-well plates (e.g. pdim = c(nrow=24,ncol=16)). if pdim =NULL (default), the plate dimension will be estimated from the input data.
Transformation
The transformation that is applied to the data. All calculations are done on additive scale.