phylotools (version 0.2.2)

dat2phylip: Conver the data frame to sequential PHYLIP format file

Description

Convert and save a data frame to sequential PHYLIP file.

Usage

dat2phylip(dat, outfile = "out.phy")

Arguments

dat

the data frame returned by read.phylip, read.fasta.

outfile

character string represents the phylip file to be generated.

Value

This is a subroutine, there is no return value.

Details

The output will be in sequential PHYLIP format.

References

http://www.genomatix.de/online_help/help/sequence_formats.html

See Also

dat2fasta, read.fasta, read.phylip

Examples

# NOT RUN {
  cat(
  ">seq_2", "GTCTTATAAGAAAGAATAAGAAAG--AAATACAAA-------AAAAAAGA",
  ">seq_3", "GTCTTATAAGAAAGAAATAGAAAAGTAAAAAAAAA-------AAAAAAAG",
  ">seq_5", "GACATAAGACATAAAATAGAATACTCAATCAGAAACCAACCCATAAAAAC",
  ">seq_8", "ATTCCAAAATAAAATACAAAAAGAAAAAACTAGAAAGTTTTTTTTCTTTG",
  ">seq_9", "ATTCTTTGTTCTTTTTTTTCTTTAATCTTTAAATAAACCTTTTTTTTTTA",
  file = "trn1.fasta", sep = "\n")

res <- read.fasta("trn1.fasta")
dat2phylip(res)
unlink("trn1.fasta")
unlink("out.phy")
# }