diagplot.noiseq.saturation

one or more R plotting device to direct the plot
    result to. Supported mechanisms: <code>"x11"</code> (default),
    <code>"png"</code>, <code>"jpg"</code>, <code>"bmp"</code>, <code>"pdf"</code> or
    <code>"ps"</code>.

the vector of biotypes, one for each row of x.

path

Helper function for <code><a href="/link/diagplot.noiseq?package=metaseqR&version=1.12.2" rd-options="" data-mini-rdoc="metaseqR::diagplot.noiseq">diagplot.noiseq</a></code> to plot
    feature detection saturation as presented in the NOISeq
    package vignette. It has two main outputs: a set of
    figures, one for each input sample depicting the
    saturation for each biotype and one single multiplot
    which depicts the saturation of all samples for each
    biotype. It expands the saturation plots of NOISeq by
    allowing more samples to be examined in a simpler way.
    Don't use this function directly. Use either
    <code><a href="/link/diagplot.metaseqr?package=metaseqR&version=1.12.2" rd-options="" data-mini-rdoc="metaseqR::diagplot.metaseqr">diagplot.metaseqr</a></code> or
    <code><a href="/link/diagplot.noiseq?package=metaseqR&version=1.12.2" rd-options="" data-mini-rdoc="metaseqR::diagplot.noiseq">diagplot.noiseq</a></code>.

Provides an interface to several normalization and
    statistical testing packages for RNA-Seq gene expression data.
    Additionally, it creates several diagnostic plots, performs
    meta-analysis by combinining the results of several statistical
    tests and reports the results in an interactive way.

Panagiotis Moulos

metaseqR

An R package for the analysis and result reporting
    of RNA-Seq data by combining multiple statistical
    algorithms.

diagplot.noiseq.saturation function

Helper function for <code><a href="diagplot.noiseq" rd-options="">diagplot.noiseq</a></code> to plot
    feature detection saturation as presented in the NOISeq
    package vignette. It has two main outputs: a set of
    figures, one for each input sample depicting the
    saturation for each biotype and one single multiplot
    which depicts the saturation of all samples for each
    biotype. It expands the saturation plots of NOISeq by
    allowing more samples to be examined in a simpler way.
    Don't use this function directly. Use either
    <code><a href="diagplot.metaseqr" rd-options="">diagplot.metaseqr</a></code> or
    <code><a href="diagplot.noiseq" rd-options="">diagplot.noiseq</a></code>.

diagplot.noiseq.saturation: Simpler implementation of saturation plots inspired from NOISeq package

Description

Usage

Arguments

Value