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ELISAtools (Developing branch)

R software tool package to do ELISA analysis, especially with batch effect correction/normalization

Installation

To install the release version of package (v0.1.5)

install.packages("ELISAtools")

Or to install the latest code from github

devtools::install_github("BULQI/ELISAtools")

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Version

Install

install.packages('ELISAtools')

Monthly Downloads

413

Version

0.1.5

License

MIT + file LICENSE

Maintainer

Feng Feng

Last Published

January 21st, 2021

Functions in ELISAtools (0.1.5)

annotate.plate

S3 method to annotate ELISA plate

combineData

Combine elisa_batch data

elisa_run

Constructor function to build an elisa_run object

ELISAtools-package

ELISA data analysis with batch correction

elisa_batch-class

S4 class definition of an elisa_batch object

elisa_run-class

S4 class definition of an elisa_run object

avoidZero

Get rid of zeros in a numeric vector

elisa_plate-class

S4 class definition of an elisa_plate object

elisa_batch

Constructor function to build an elisa_batch object

loadData

Read data according to the design file

elisa_plate

Constructor function to build an elisa_plate object

plotAlignData

Plot all batch data together

predictAll

Predict the concentration of samples based on fitting

read.annotation

Read the annotation of single ELISA plate

rangeOD

Get the OD ranges (min/max)

plotBatchData

Plot ELISA data for one batch

prepareInitsLM

Prepare initial values for fitting shifts

prepareRegInput

Prepare the input for regressoin

saveDataText

Save elisa_batch analysis results

saveDB

Save the elisa_batch data

runFit

Fit 5- or 4-parameter logistic function

load.ODs

Function to load OD data

loadDB

Read the saved elisa_batch data

read.plate

Read the single ELISA OD plate

inv.f5pl

The inverse of the 5-parameter logistic function

read.annotations

Read the annotations of plates

f5pl

The five-parameter logistic function

reportHtml

Report ELISA data in HTML format.

read.plates

Read the ELISA OD files