Spatial Ecology Miscellaneous Methods
ecospat.CCV.communityEvaluation.prob
Evaluates community predictions directly on the probabilities (i.e., threshold independent)
Prediction Mean
Produce response plots for ESMs
Ensemble of Small Models: Projects Simple Bivariate Models Into New Space Or Time
Generate Binary Models
Variable contribution in ESM
SESAM Probability Ranking Rule
Calculate Boyce Index
Thresholds for Ensemble of Small Models
Ensemble of Small Models: Calibration of Simple Bivariate Models
Calculate An Adjusted D2
GLM Cross Validation
Maxent Cross Validation
Calculate Phylogenetic Diversity Measures
Correlation Plot
GBM Cross Validation
Species Co-Occurrences
A climate analogy setection tool for the modeling of species distributions
Calibration And Evaluation Dataset
Constrained Co-Occurrence Analysis.
Cohen's Kappa
Minimum Dispersal Routes)
Maxent Variable Importance
Maximum TSS
MESS
ecospat.mantel.correlogram
Mantel Correlogram
Make Data Frame
RandomForest Cross Validation
Minimal Predicted Area
Model Evaluation For A Given Threshold Value
Dynamic Occurrence Densities Grid
Niche Expansion, Stability, and Unfilling
ecospat.niche.dynIndexProjGeo
Projection of niche dynamic indices to the Geography
ecospat.niche.equivalency.test
Niche Equivalency Test
Calculate Niche Overlap
Delineation of the distribution's margin and its uncertainty
Extract occupied patches of a species in geographic space.)
Maximum Kappa
GLM Permutation Function
ecospat.occ.desaggregation
Species Occurrences Desaggregation
Niche position and niche breadth)
Projection of Occurrence Densities to the Geography
ecospat.niche.similarity.test
Niche Similarity Test
Number Of Predictors
Niche position and niche breadth)
Niche Categories and Species Density
Plot True skill statistic (TSS)
ecospat.plot.overlap.test
Plot Overlap Test
Reclassifying grids function
Plot Variables Contribution
Draw Centroid Arrows
Plot Kappa
Test Data For The Ecospat package
Plot MESS
Plot Niche
ecospat.poolingEvaluation
Evaluation of species distribution models using the pooling procedure
Test Tree For The Ecospat package
Quantification of the range size of a species using habitat suitability maps and IUCN criteria)
Variation Partitioning For GLM Or GAM
Test Data For The ecospat.mdr function
Test Environmental Rasters for The Ecospat package
ecospat.rand.pseudoabsences
Sample Pseudo-Absences
Test Data For The Niche Overlap Analysis
Sample Environmental Variables
Random Ecologically Stratified Sampling of equal numbers
Test AVS Dataset For The Ecospat package
Random Ecologically Stratified Sampling of propotional numbers
Test Data For The Niche Dynamics Analysis In The Native Range Of A Hypothetical Species
Test Data For The Niche Dynamics Analysis In The Invaded Range Of A Hypothetical Species
ecospat.ESM.EnsembleEvaluation
Ensemble of Small Models: Evaluation via the Pooling procedure
ecospat.CCV.createDataSplitTable
Creates a DataSplitTable for usage in ecospat.ccv.modeling.
ecospat.CCV.communityEvaluation.bin
Calculates a range of community evaluation metrics based on different thresholding techniques.
Community Evaluation
ecospat.ESM.EnsembleModeling
Ensemble of Small Models: Evaluates and Averages Simple Bivariate Models To ESMs
ecospat.ESM.EnsembleProjection
Ensemble of Small Models: Projects Calibrated ESMs Into New Space Or Time.
Pairwise co-occurrence Analysis with calculation of the C-score index.
Runs indivudual species distribuion models with SDMs or ESMs