beadarrayMSV (version 1.0.3)

generatePolyCenters: Generate list of possible genotype categories

Description

Generates a list of all possible genotype categories for a specific ploidy, including the theoretic allele ratios

Usage

generatePolyCenters(ploidy)

Arguments

ploidy

One of di, tetra, or tetra.red. The first allows only monomorphics and SNPs, the second allows PSVs and MSVs as well. The option tetra.red is the same as tetra, e

Value

• List including
• centers
  List of possible B allele ratios for each cluster category
• classification
  List of possible cluster categories
• size
  Numeric vector with the maximum number of clusters within each category

Details

Usually called by other functions

See Also

callGenotypes, getCenters, testHardyWeinberg, plotGenotypes

Examples

#For genotype calling of tetraploid genomes
polyCent <- generatePolyCenters(ploidy='tetra')
print(polyCent$classification)