get.significant.pairs:
function to returns the results of detrending as a data.frame
Description
get.significant.pairs returns a data.frame of observed distances between the specified pair of PWMs in the foreground set of the sequences as well as the background set of sequences. The distance distribution for the pair
in the background is used for detrending.
Usage
"get.significant.pairs"(x, pwm1, pwm2, bin_length=20, z_value=3, overlap=0, abs.distance=FALSE)
Arguments
x
an object of the class "cobindr", which will hold all necessary
information about the sequences and the hits.
pwm1
name of the first PWM
pwm2
name of the second PWM
bin_length
defines size of bins for distance analysis, default value is 20nucleotides
z_value
level of significance
overlap
number of nucleotides which are allowed for an overlap