plot.detrending

plot.detrending-method

plot.detrending,cobindr-method


    an object of the class "cobindr", which will hold all necessary
    information about the sequences and the hits.


pwm1

pwm2


    defines size of bins for distance analysis, default value is 20
    nucleotides
  

bin_length

z_value

number of nucleotides which are allowed for an overlap

overlap

abs.distance


plot.detrending plots a histograms of observed distances between the
specified pair of PWMs in the foreground set of the sequences as well as
the background set of sequences. The distance distribution for the pair
in the background is used for detrending.


 hplot

 dplot 

Finding and analysing co-occuring motifs of transcription
factor binding sites in groups of genes

Manuela Benary

cobindR

Finding Co-occuring motifs of transcription factor binding sites