r3Cseq (version 1.18.0)

getContrInteractionsInRefseq: identified significant interaction regions for RefSeq genes

Description

Get a list of genes that contain strong interaction signals in the control

Usage

getContrInteractionsInRefseq(obj,cutoff.qvalue=0.05,expanded_upstream=50e3,expanded_downstream=10e3)

Arguments

obj

obj is r3Cseq or r3CseqInBatch object

cutoff.qvalue

Numeric. The cutoff q-value (default=0.05)

expanded_upstream

Numeric. The expanded distance from the upstream of a gene start (default=50e3)

expanded_downstream

Numeric. The expanded distance from the downstream of a gene end (default =10e3)

Value

List of identified genes, which contain strong interaction signals

See Also

getContrInteractionsInRefseq

Examples

 # See the vignette