getGeneCount


Calculate read counts of genes from a ReadCountSet object


The package generally provides methods for gene set
enrichment analysis of high-throughput RNA-Seq data by
integrating differential expression and splicing. It uses
negative binomial distribution to model read count data, which
accounts for sequencing biases and biological variation. Based
on permutation tests, statistical significance can also be
achieved regarding each gene's differential expression and
splicing, respectively.

Xi Wang

SeqGSEA

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating
differential expression and splicing

getGeneCount function

Calculate read counts of genes from a ReadCountSet object

getGeneCount: Calculate read counts of genes from a ReadCountSet object

Description

Usage

Arguments

Value

Details

See Also

Examples