ebimetagenomics (version 0.6)

getProjectSummary: Download an EMG project summary into a data frame

Description

This downloads an EMG project summary file into an R data frame for subsequent analysis.

Usage

getProjectSummary(projectID)

Arguments

projectID

A character string representing an EMG accession ID (eg. MGYS00002669 or SRP047083).

Value

An R data frame containing a list of all samples and runs associated with the project, one row per run. The projectID is associated with the data frame via the attribute project.id.

See Also

getProjectsList, projectSamples, projectRuns, runsBySample, read.project.csv

Examples

# NOT RUN {
ps = getProjectSummary("MGYS00000646")
# Tabulate number of runs by sample
table(ps$sample_id)
# }