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ebimetagenomics (version 0.6)
EBI Metagenomics Portal
Description
Functions for querying the EBI Metagenomics Portal
. The current main focus is on taxa abundance data, but the intention is that this package should evolve into a general purpose package for working with EBI Metagenomics data using R.
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Install
install.packages('ebimetagenomics')
Monthly Downloads
42
Version
0.6
License
LGPL-3
Maintainer
Darren Wilkinson
Last Published
October 28th, 2018
Functions in ebimetagenomics (0.6)
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getProjectSummary
Download an EMG project summary into a data frame
analyseOtu
Analysis of OTU count data
convertOtuTad
Converts an OTU count data frame to a TAD data frame
runsBySample
Find runs associated with a particular sample ID within an EMG project
getProjectsList
Download the EMG projects list into a data frame
mergeOtu
Merges two OTU count data data frames to produce a combined OTU count data data frame
read.otu.tsv
Reads OTU count data associated with a EMG run
plotOtu
Plots OTU count data
read.project.csv
Read an EMG project summary into a data frame
projectRuns
Find runs associated with an EMG project
projectSamples
Find samples associated with an EMG project
getRunOtu
Downloads OTU count data associated with a EMG run
getSampleOtu
Downloads and merges all of the OTU count data associated with a EMG sample