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SCOPer

SCOPer provides a computational framework for the identification of B cell clonal relationships from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. It includes methods for assigning clonal identifiers using sequence identity, hierarchical clustering, and spectral clustering. SCOPer is part of the Immcantation analysis framework.

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For help and questions please contact the Immcantation Group

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Version

Install

install.packages('scoper')

Monthly Downloads

473

Version

1.3.0

License

AGPL-3

Maintainer

Susanna Marquez

Last Published

October 6th, 2023

Functions in scoper (1.3.0)

plotCloneSummary

Plot clonal clustering summary
ExampleDb

Example database
hierarchicalClones

Hierarchical clustering method for clonal partitioning
scoper

The SCOPer package
scoper-package

scoper: Spectral Clustering-Based Method for Identifying B Cell Clones
ScoperClones-class

S4 class containing clonal assignments and summary data
identicalClones

Sequence identity method for clonal partitioning
spectralClones

Spectral clustering method for clonal partitioning