phyreg (version 0.7)

inf: Provides information about the stored output of a call to phyreg()

Description

After an instruction m<-phyreg(...), you can type inf(m,...) to provide information about m. You can see output again, or that you didn't ask for from the initial call of phyreg(). And you can find out whether optional storage took place of the different possible outputs, if not, how to ask for it, and if so, how to access it.

Usage

inf(inpr, ..., oppf = 5, opdf = 1, oprho = 0, dfwarning = 0, plot=0, others)

Arguments

inpr

An object of class phyreglm i.e. that has been produced from an assignment of the form m<-phyreg(...).

...

To see the list of the possible parameters, call inf() itself with no parameters. They are arguments of phyreg that influence printing and storage of information. They should be supplied in quotation marks e.g. inf(m,"sinputs","means").

oppf

If non-zero, see the p-value an F-ratio for the test conducted in the phyreg() call, with ndigits=oppf.

opdf

If non-zero, see a breakdown of the degrees of freedom in the test conducted by the phyreg() call.

oprho

If non-zero, see rho-related information from the phyreg() call, with ndigits=oprho.

dfwarning

If non-zero, see warnings about the loss of degrees of freedom for phylogenetic reasons in the test conducted by the phyreg() call. See Details under phyreg for an explanation.

plot

If non-zero, this produces the plot that phyreg can produce at the time of the call, so see phyreg for an explanation of the plot itself.

others

A list of further values are permitted, all need to be in quotation marks. There is no need to specify them as, for example, others="means", and they can be given directly as separate arguments to inf(). They are all parameters of phyreg. First, "oppf","opdf","oprho", "dfwarning", "plot" can be specified in this way, in which case they receive default values of 5, 1, 5, 1, and 1, respectively. A second batch control the printing out of values, namely "parmx", "parmxz","opfunccall","means", and inf will print these for you without having to rerun phyreg. Finally, the storage of information is determined by "lmshortx", "lmshortxz", "lmlongx", "lmlongxz", "paper", "linputs", "sinputs", "hinput". inf will tell you whether the listed items were stored in that particular call, how to store it next time if it wasn't this time, and how to access it if was stored this time.

Details

Examples are given under phyreg.

See Also

phyreg