Learn R Programming

palaeoverse

palaeoverse is an R package developed by palaeobiologists, for palaeobiologists.

The aim of palaeoverse is to generate a community-driven software package of generic functions for the palaeobiological community. The package does not provide implementations of statistical analyses, rather it provides auxiliary functions to help streamline analyses and improve code readability and reproducibility.

Development team

Installation

The stable version of palaeoverse can be installed from CRAN using:

install.packages("palaeoverse")

The development version of palaeoverse can be installed via GitHub using:

# install.packages("devtools")
devtools::install_github("palaeoverse/palaeoverse")

How to contribute?

If you are interested in contributing to the palaeoverse R package, you can do so by following these guidelines. We have also adopted a set of standards and structure to follow for contributing to the project. If you would like to contribute to palaeoverse, we strongly advise reading this document.

Code of Conduct

As with any community project, society, or meeting we feel it is important to established some expectations of behaviour in the palaeoverse community. Please read our code of conduct, and reach out if you ever face any issues. Everyone has the right to live and work in a harassment-free environment.

Citation

If you use the palaeoverse R package in your work, please cite as:

Jones, L.A., Gearty, W., Allen, B.J., Eichenseer, K., Dean, C.D., Galván S., Kouvari, M., Godoy, P.L., Nicholl, C., Dillon, E.M., Flannery-Sutherland, J.T., Chiarenza, A.A. 2023. palaeoverse: A community-driven R package to support palaeobiological analysis. Methods in Ecology and Evolution 14(09), 2205--2215. doi: 10.1111/2041-210X.14099.

Copy Link

Version

Install

install.packages('palaeoverse')

Monthly Downloads

362

Version

1.4.0

License

GPL (>= 3)

Issues

Pull Requests

Stars

Forks

Maintainer

Lewis A. Jones

Last Published

October 14th, 2024

Functions in palaeoverse (1.4.0)

tax_expand_time

Generate pseudo-occurrences from temporal range data
lat_bins_degrees

Generate equal-width latitudinal bins
tax_check

Taxonomic spell check
reefs

Example dataset: Phanerozoic reefs from the PaleoReefs Database
palaeorotate

Palaeorotate fossil occurrences
tax_expand_lat

Generate pseudo-occurrences from latitudinal range data
phylo_check

Check phylogeny tip names
look_up

Look up geological intervals and assign geological stages
tax_range_space

Calculate the geographic range of fossil taxa
palaeoverse-package

palaeoverse: Prepare and Explore Data for Palaeobiological Analyses
tax_unique

Filter occurrences to unique taxa
tetrapods

Example dataset: Early tetrapod data from the Paleobiology Database
time_bins

Generate time bins
tax_range_time

Calculate the temporal range of fossil taxa
tax_range_strat

Generate a stratigraphic section plot
lat_bins

Generate equal-width latitudinal bins
GTS2012

Geological Timescale 2012
bin_lat

Assign fossil occurrences to latitudinal bins
axis_geo

Add an axis with a geological timescale
group_apply

Apply a function over grouping(s) of data
lat_bins_area

Generate equal-area latitudinal bins
bin_time

Assign fossil occurrences to time bins
bin_space

Assign fossil occurrences to spatial bins
interval_key

Example dataset: Interval key for the look_up function
GTS2020

Geological Timescale 2020