haploReconstruct (version 0.1.2)

map,hbr-method: Map from reconstructed haplotype-blocks to windows

Description

A method returning information which windows are contain in which reconstructed haplotype-block.

Usage

"map"(object)

Arguments

object

object of class hbr containing the results of reconstructed haplotype-blocks

Value

list with elements corresponding to all reconstructed haplotype-blocks (id for all blocks without filtering based on the number of markers). Each element contains a vector of window indices that are contained in the block

Details

The method operates on hbr objects and returns a list summarizing the mapping information from reconstructed haplotype-blocks to contained windows. NOTE: A window is only listed for a haplotype-block when at least min.inter many markers of the block are in that window.

See Also

hbr ex_dat summary.hbr plot.hbr plot_cluster_trajectories plot_marker_trajectories rev_map markers plot_hbr_freq inspect_window inspect_window_PCA inspect_window_avLink inspect_window_dbScan number_hbr