BoneProfileR (version 4.0)

Tools to Study Bone Compactness

Description

Bone Profiler is a scientific method and a software used to model bone section for paleontological and ecological studies. See Girondot and Laurin (2003) and Gônet, Laurin and Girondot (2022) .

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Version

Install

install.packages('BoneProfileR')

Monthly Downloads

301

Version

4.0

License

GPL-2

Maintainer

Marc Girondot

Last Published

July 7th, 2025

Functions in BoneProfileR (4.0)

summary.BoneProfileR

Plot a bone section

BP_FitMLCompactness

Estimation of the likelihood of a bone section

BP_FitMLPeriodicCompactness

Estimation of the likelihood of a bone section

BP_ChooseForeground

Let the user to choose the foreground color of an image

BP_DetectBackground

Detects the background color of an image

BoneProfileR-package

A Model for Bone Compactness.

BP_GetFittedParameters

Return the fitted parameters

BP_FitMLRadialCompactness

Estimation of the likelihood of a bone section

BP_flexit

Return the flexit for BoneProfileR models

BP_AutoFit

Fit model automatically

BP_ListAnalyses

List the analyses stored in an object

BP_OpenImage

Open an image

Run a shiny application to fit bone section

BP_Report

Generate a pdf report for the analyzed bone

BP_ChooseBackground

Let the use to choose the background color of an image

BP_ChooseCenter

Let the user to choose the center of the bone

BP_LnLCompactness

Estimation of the likelihood of a bone section

Erinaceus_europaeus

Example of hedgehog femur

plot.BoneProfileR

Plot a bone section

BP_DetectForeground

Detects the foreground color of an image

BP_EstimateCompactness

Estimation of the compactness of a bone section

BP_DetectCenters

Detect the centers of an image

BP_DuplicateAnalysis

Duplicates an analysis stored in an object

BP_FitBayesianCompactness

Estimation of Bayesian model of a bone section

BP_FitBayesianPeriodicCompactness

Estimation of the likelihood of a bone section