pathway.mean.test(y1,y2,dag,alpha,perm.num=10000,variance=TRUE,paired=FALSE)
gRbase
for more details.TRUE
estimated variances s1 and s2 are reported.TRUE
Hotelling test for paired samples is calculated and the test on the variances is not performed.TRUE
, this is not returned.TRUE
, this is not returned.TRUE
, this is not returned.TRUE
variances are heteroschedastic. If paired is TRUE
, this is not returned.TRUE
, this is not returned.TRUE
, this is not returned.pathway.var.test
.The expression data may contain some genes differing from those in the pathway: in such case the function automatically takes the intersection between the two gene sets.
This function requires gRBase
and qpgraph
packages.
pathway.var.test
, clique.var.test
,
clique.mean.test
,
data(examples)
pathway.mean.test(y1, y2, dag_bcell, 0.05, 100)
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