medfate (version 2.3.7)

plot.spwb_day: Plots simulation results for one day

Description

Functions to plot the subdaily simulation results of spwb_day, growth_day or the transpiration calculations of transp_transpirationSperry.

Usage

# S3 method for growth_day
plot(x, type="PlantTranspiration", bySpecies = FALSE, 
                        xlim = NULL, ylim=NULL, xlab = NULL, ylab = NULL, ...)
# S3 method for spwb_day
plot(x, type="PlantTranspiration", bySpecies = FALSE, 
                        xlim = NULL, ylim=NULL, xlab = NULL, ylab = NULL, ...)
# S3 method for pwb_day
plot(x, type="PlantTranspiration", bySpecies = FALSE, 
                       xlim = NULL, ylim=NULL, xlab = NULL, ylab = NULL, ...)

Arguments

x

An object of class spwb_day, growth_day or pwb_day.

type

The information to be plotted (see details).

bySpecies

Allows aggregating output by species, before drawing plots. Aggregation can involve a sum (as for plant lai or transpiration) or a LAI-weighted mean (as for plant stress or plant water potential).

xlim

Range of values for x.

ylim

Range of values for y.

xlab

x-axis label.

ylab

y-axis label.

...

Additional parameters for function plot.

Details

The following plots are currently available for spwb_day and pwb_day:

• "LeafPsi":Leaf water potential (for shade and sunlit leaves).

• "LeafPsiAverage":Average leaf water potential.

• "RootPsi":Root crown water potential.

• "StemPsi":(Upper) stem water potential.

• "StemPLC":(Average) percentage of loss conductance in the stem conduits.

• "StemRWC":(Average) relative water content in the stem.

• "LeafRWC":Relative water content in the leaf.

• "StemSympRWC":(Average) relative water content in the stem symplasm.

• "LeafSympRWC":Relative water content in the leaf symplasm.

• "SoilPlantConductance":Overall soil plant conductance (calculated as the derivative of the supply function).

• "PlantExtraction": Water extracted from each soil layer.

• "PlantTranspiration": Plant cohort transpiration per ground area.

• "TranspirationPerLeaf": Plant cohort transpiration per leaf area.

• "PlantGrossPhotosynthesis": Plant cohort gross photosynthesis per ground area.

• "GrossPhotosynthesisPerLeaf": Plant cohort gross photosynthesis per leaf area.

• "PlantNetPhotosynthesis": Plant cohort net photosynthesis per ground area.

• "NetPhotosynthesisPerLeaf": Plant cohort net photosynthesis per leaf area.

• "PlantAbsorbedSWR": Absorbed short wave radiation per ground area (differentiates sunlit and shade leaves).

• "LeafTranspiration": Instantaneous transpiration per leaf area (differentiates sunlit and shade leaves).

• "LeafGrossPhotosynthesis": Instantaneous gross photosynthesis per leaf area (differentiates sunlit and shade leaves).

• "LeafNetPhotosynthesis": Instantaneous net photosynthesis per leaf area (differentiates sunlit and shade leaves).

• "LeafAbsorbedSWR": Absorbed short wave radiation per leaf area (differentiates sunlit and shade leaves).

• "LeafNetLWR": Net long wave radiation per leaf area (differentiates sunlit and shade leaves).

• "LeafCi": Leaf intercellular CO2 concentration (differentiates sunlit and shade leaves).

• "LeafIntrinsicWUE": Leaf intrinsic water use efficiency, i.e. the ratio between instantaneous photosynthesis and stomatal conductance (differentiates sunlit and shade leaves).

• "LeafVPD": Leaf vapour pressure deficit (differentiates sunlit and shade leaves).

• "LeafStomatalConductance": Leaf stomatal conductance to water vapour (differentiates sunlit and shade leaves).

• "LeafTemperature": Leaf temperature (differentiates sunlit and shade leaves).

• "Temperature": Above-canopy, inside-canopy and soil temperature.

• "CanopyEnergyBalance": Canopy energy balance components.

• "SoilEnergyBalance": Soil energy balance components.

• "PlantWaterBalance": Difference between water extraction from the soil and transpired water per ground area.

• "WaterBalancePerLeaf": Difference between water extraction from the soil and transpired water per leaf area.

See Also

spwb_day, plot.spwb

Examples

# NOT RUN {
#Load example daily meteorological data
data(examplemeteo)

#Load example plot plant data
data(exampleforestMED)

#Default species parameterization
data(SpParamsMED)

#Initialize control parameters
control = defaultControl("Granier")
control$ndailysteps = 24  

#Initialize soil with default soil params (2 layers)
examplesoil = soil(defaultSoilParams(2), W=c(0.5,0.5))


#Switch to 'Sperry' transpiration mode
control = defaultControl("Sperry")

#Simulate one day only
x2 = forest2spwbInput(exampleforestMED,examplesoil, SpParamsMED, control)
d = 100
sd2<-spwb_day(x2, rownames(examplemeteo)[d], 
             examplemeteo$MinTemperature[d], examplemeteo$MaxTemperature[d], 
             examplemeteo$MinRelativeHumidity[d], examplemeteo$MaxRelativeHumidity[d], 
             examplemeteo$Radiation[d], examplemeteo$WindSpeed[d], 
             latitude = 41.82592, elevation = 100, 
             slope= 0, aspect = 0, prec = examplemeteo$Precipitation[d])

#Display transpiration for subdaily steps
plot(sd2, "PlantTranspiration")
# }