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xps (version 1.32.0)

plotBoxplot: Box Plots for Device

Description

Produce box-and-whisker plot(s) of the samples for the selected device.

Usage

plotBoxplot(x, which   = "", size    = 0, transfo = log2, range   = 0, names   = "namepart", mar     = NULL, las     = 2, cex     = 1.0, dev     = "screen", outfile = "BoxPlot", w       = 800, h       = 540, ...)

Arguments

x
object of class DataTreeSet or ExprTreeSet.
which
type of probes to be used, for details see validData.
size
length of sequence to be generated as subset.
transfo
a valid function to transform the data, usually log2, or 0.
range
determines how far the plot whiskers extend out from the box.
names
optional vector of sample names.
mar
plot margin.
las
style of axis labels.
cex
amount by which plotting text and symbols should be magnified.
dev
graphics device to plot to, i.e. one of “screen”, “jpeg”,“png”, “pdf” or “ps”.
outfile
the name of the output file.
w
the width of the device in pixels.
h
the height of the device in pixels.
...
optional arguments to be passed to boxplot.

Details

Produces a boxplot for slot data for an object of class DataTreeSet, ExprTreeSet or QualTreeSet for the selected graphics device.

See Also

boxplot, plotBorder, plotNUSE, plotRLE