iClusterPlus (version 1.8.0)

plotiCluster: A function to generate cluster separability matrix plot.

Description

A function to generate cluster separability matrix plot.

Usage

plotiCluster(fit,label=NULL)

Arguments

fit

A iCluster object

label

Sample labels

Value

no value returned.

References

Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912.

See Also

iCluster, compute.pod

Examples

# library(iCluster)
# data(breast.chr17)
# fit=iCluster(datasets=breast.chr17, k=4, lambda=c(0.2,0.2))
# plotiCluster(fit=fit, label=rownames(breast.chr17[[2]]))
# compute.pod(fit)