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iClusterPlus (version 1.8.0)

Integrative clustering of multi-type genomic data

Description

Integrative clustering of multiple genomic data using a joint latent variable model

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Version

Version

1.8.0

License

GPL (>= 2)

Maintainer

Qianxing Mo

Last Published

February 15th, 2017

Functions in iClusterPlus (1.8.0)

variation.hg18.v10.nov.2010

Human genome variants of the NCBI 36 (hg18) assembly
plotRI

A function to generate reproducibility index plot.
compute.pod

A function to compute the proportion of deviation from perfect block diagonal matrix
iCluster

Integrative clustering of multiple genomic data types
breast.chr17

Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
iClusterPlus

Integrative clustering of multiple genomic data types
plotiCluster

A function to generate cluster separability matrix plot.
gbm

GBM data
utility

Utility functions for iClusterPlus package
plotHeatmap

A function to generate heatmap panels sorted by integrated cluster assignment.
simuResult

The results for the analysis of the simulated data.
tune.iClusterPlus

Integrative clustering of multiple genomic data
glp

good lattice points using the uniform design
CNregions

A function to remove redundant copy number regions
coord

genomic coordinates
iCluster2

Integrative clustering of multiple genomic data types
tune.iCluster2

Integrative clustering of multiple genomic data types