psimi25ComplexEntry-class

complexes,psimi25ComplexEntry-method

interactors,psimi25ComplexEntry-method

show,psimi25ComplexEntry-method

 A class representing the complex data extracted from
  file in PSI-MI 2.5 format.

classes

Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.

Jitao David Zhang

RpsiXML

R interface to PSI-MI 2.5 files

psimi25ComplexEntry-class function

Objects can be created by calls of the form <code>parsePsimi25Complex</code>

Objects from the Class

<dl>
    <dt><code>releaseDate</code>:</dt><dd>Object of class <code>"character"</code>,
      release date</dd> <dt><code>interactors</code>:</dt><dd>Object of class <code>"matrix"</code>,
      interactors involved </dd> <dt><code>complexes</code>:</dt><dd>Object of class <code>"list"</code>, complexes</dd> </dl> 

Slots

<dl>
    <dt>complexes</dt><dd><code>signature(x = "psimi25ComplexEntry")</code>:
      returns all complexes </dd> <dt>interactors</dt><dd><code>signature(x = "psimi25ComplexEntry")</code>:
      returns information of interactors</dd> <dt>show</dt><dd><code>signature(object = "psimi25ComplexEntry")</code>: shows
      information of all the complexes</dd> </dl> 

Methods

A class representing the complex data extracted from
  file in PSI-MI 2.5 format.

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psimi25ComplexEntry-class: Class "psimi25ComplexEntry"

Description

Arguments

Objects from the Class

Slots

Methods

See Also

Examples