Build protein complex hypergraph from PSI-MI 2.5 files
Turns null or NA into character "NA"
Extract bait, prey, participant, inhibitor, pubmed, confidence value, interaction type,
or neutral component information from an object of psimi25Interaction-class
psimi25InteractionEntry-class
Class "psimi25InteractionEntry"
Get cross reference(s) of interactors from PSI-MI 2.5 files
Class "psimi25Experiment"
A class representing interactor from PSI-MI 2.5 XML files
Get interaction number of the given object
Converts list into matrix
Class "psimi25Graph" ~~~
psimi25ComplexEntry-class
Class "psimi25ComplexEntry"
Class "psimi25Hypergraph"
Get information of interactors of the given object
Convert a vector of PSI-MI 2.5 XML files into graph objects
Extract or set source database name or ID in the source database
Extract complexes from psimi25ComplexEntry
Accessor functions for complex
Type of the interaction
maps one type of grap onto another
The UniProt Identifier in the PSI-MI 2.5 XML file
Class "psimi25Interaction"
Methods for Function interactorInfo in Package `RpsiXML'
psimi25Hypergraph2GraphNEL
Convert psimi25Hypergraph to graphNEL
Finds identifiers of a given object
Class "psimi25Complex"
Validating PSI-MI 2.5 file with MIF25 XML schema
A function to obtain the abstract information via a Pubmed ID
Translate interactors into other identifiers
Convert a vector of PSI-MI 2.5 XML files into graph objects based on pubmedID
Class "psimi25Attribute"
Supported PSI-MI 2.5 XML data sources
Methods for Function uniprot in Package `RpsiXML'
Methods for function availableXrefs
List interactions in the given psimi25InteractionEntry object
Parsing PSI-MI 2.5 XML documents into interactions
Interactor info in a matrix
xmlEventParse handlers for PSI-MI XML documents
Class "psimi25Source"
Get or Set the NCBI Taxonomy ID or Organism Name