A class representing data source compatible with PSI-MI
2.5 XML data exchange format
Arguments
Objects from the Class
Objects can be created by calls of the form new("psimi25Source", ...)
Slots
label:
Object of class "character", a
meaningful unique label of the database, does not necessarily have to be
the identifier used in the PSI-MI files. The value is advised to
be overwritten by the objects
sourceDb:
Object of class "character", the
character string used in the PSI-MI files to identify the source
database. The value must be overwritten by the object, depending
on the database identifier used in the PSI-MI file.
uniprotSymbol:
Object of class "character", the
identifier of UniProf reference in "primaryRef" or "secondaryRef"
attributes of the interactors, telling the parser where to find
UniProt symbol of the interactors. The value must be overwritten by
the objects.
Methods
sourceDb
signature(x = "psimi25Source"): returns the
source database
uniprot
signature(x = "psimi25Source"): returns the
uniprot identifier of the PSI-MI 2.5 XML file