Accessor functions for complex
Methods for function availableXrefs
Supported PSI-MI 2.5 XML data sources
Extract bait, prey, participant, inhibitor, pubmed, confidence value, interaction type,
or neutral component information from an object of psimi25Interaction-class
xmlEventParse handlers for PSI-MI XML documents
maps one type of grap onto another
Get cross reference(s) of interactors from PSI-MI 2.5 files
Extract complexes from psimi25ComplexEntry
A function to obtain the abstract information via a Pubmed ID
Build protein complex hypergraph from PSI-MI 2.5 files
Get information of interactors of the given object
Converts list into matrix
Turns null or NA into character "NA"
Interactor info in a matrix
List interactions in the given psimi25InteractionEntry object
Methods for Function interactorInfo in Package `RpsiXML'
Get interaction number of the given object
Type of the interaction
Class "psimi25Attribute"
Parsing PSI-MI 2.5 XML documents into interactions
Class "psimi25Experiment"
Class "psimi25Graph" ~~~
A class representing interactor from PSI-MI 2.5 XML files
Class "psimi25Source"
psimi25InteractionEntry-class
Class "psimi25InteractionEntry"
Class "psimi25Interaction"
Class "psimi25Complex"
Class "psimi25Hypergraph"
psimi25ComplexEntry-class
Class "psimi25ComplexEntry"
psimi25Hypergraph2GraphNEL
Convert psimi25Hypergraph to graphNEL
Methods for Function uniprot in Package `RpsiXML'
The UniProt Identifier in the PSI-MI 2.5 XML file
Validating PSI-MI 2.5 file with MIF25 XML schema
Extract or set source database name or ID in the source database
Get or Set the NCBI Taxonomy ID or Organism Name
Finds identifiers of a given object
Translate interactors into other identifiers
Convert a vector of PSI-MI 2.5 XML files into graph objects based on pubmedID
Convert a vector of PSI-MI 2.5 XML files into graph objects