myvariant (version 1.2.0)

queryVariant: Return the query result.

Description

This is a wrapper for GET query of "/query?q=" service.

Usage

queryVariant(q, ..., return.as=c("DataFrame", "records", "text"),  myvariant)

Arguments

q

query term(s).

...

Commonly queried fields include fields, size as well as several other fields. View available fields by calling ?metadata.

return.as

"DataFrame" (default), "records" (list), or "text" (JSON).

myvariant

A MyVariant object that describes how to connect to data resources. See MyVariant-class. If missing, default object will be used that accesses the main MyVariant.info portal. Default is recommended.

Value

References

http://docs.myvariant.info/en/latest/doc/variant_query_service.html#get-request http://docs.myvariant.info/en/latest/doc/variant_query_service.html#query-syntax

See Also

queryVariants getVariant getVariants

Examples

## return the query result
queryVariant("dbnsfp.variantname:BRCA2")

queryVariant("chr1:1-1000000")