Usage
stat.pops(Thresholds, tab.pop.pop, pairs, p.correct,
directory.name, out.name, file.output,
inputdata, object, value, iteration,
ref.pop)Arguments
Thresholds
Thresholds of relatedness to be used for statistics on empirical data.
tab.pop.pop
Dataframe following format of inputformat only column three and four are used for calculations. pairs
Number of randomized pairings used for reference populations.
p.correct
logical - should Yates correcture be used for $\chi^2$ statistics.
directory.name
Name of the directory results send to.
out.name
Filename of the output.
file.output
logical. Should a cluster dendogram, histograms and .txt files be sent as standard output in your working directory. In some cases (inflating NA values) it may be necessary that this value has to be set as FALSE due to problems in calculating clu
inputdata
R object or external file to be read internally with standard Demerelate inputformat. Dataframe will be split by population information and calculations will run separately. If no reference population information is object
Information whether inputdata are an object or should be read in as file.
value
String defining method to calculate allele sharing or similarity estimates. Can be set as "rxy", "Bxy" or "Mxy".
iteration
Number of bootstrap iterations in $F_{is}$ calculations.
ref.pop
R object or external file to be read internally with standard Demerelate inputformat. Custom reference populations will be loaded for the analysis. Population information of reference file will be omitted so that al