storeApply: apply a function over job results in a ciseStore instance

Description

apply a function over job results in a ciseStore instance

Usage

storeApply(store, f, n.chunks, ids=NULL, ..., verbose = FALSE, flatten1=TRUE)

Arguments

store

instance of ciseStore-class

function on GRanges stored in ciseStore

n.chunks

Number of chunks into which the jobs are to be broken; theseries of chunks is handed to foreach to extract results and apply f to them.If missing, the value of getDoParWorkers() used.

ids

defaults to NULL; if non-null, the jobs to be processed are limited to those identified in this vector.

...

additional arguments to foreach

verbose

if TRUE will allow progressbars and other messages to display

flatten1

if TRUE will execute unlist(...,recursive=FALSE) on output, defaulted to FALSE in previous version

Value

A list whose structure depends on the chunking of job identifiers. See the examples.

Details

The chunking of job identifiers will determine the degree of parallelization of application, and the form of the list that is returned. flatten1 will eventually default to TRUE.

Examples

Run this code

if (require(geuvStore2)) {
 require(BatchJobs)
 store = makeGeuvStore2()
 storeApply(store, length)
 storeApply(store, length, ids=c(1:3,603))
 }