stringgaussnet (version 1.1)

summary.STRINGNet:

Summary function for object of class STRINGNet

Description

This function displays specifically a summary object of class STRINGNet, with summary of each kind of interactions, with a distinction of interactions between initial nodes or not.

Usage

"summary"(object, ...)

Arguments

object

Object of class STRINGNet

...

Additional parameters from generic summary function

See Also

STRINGNet, STRINGNet.default, getSTRINGNet, print.STRINGNet, export.STRINGNet

Examples

# data(SpADataExpression)
# data(SpADEGenes)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.

# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
#	c("coexpression","experimental","knowledge"),0.9)

# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)