ciftiTools (version 0.1.6.0)

view_xifti_volume: View subcortex

Description

Visualize subcortex of a "xifti" object

Usage

view_xifti_volume(
  xifti,
  structural_img = "MNI",
  idx = 1,
  plane = c("axial", "sagittal", "coronal"),
  num.slices = 9,
  use_papaya = FALSE,
  z_min = NULL,
  z_max = NULL,
  verbose = TRUE,
  ...
)
view_cifti_volume(
  xifti,
  structural_img = "MNI",
  idx = 1,
  plane = c("axial", "sagittal", "coronal"),
  num.slices = 9,
  use_papaya = FALSE,
  z_min = NULL,
  z_max = NULL,
  verbose = TRUE,
  ...
)
viewCIfTI_volume(
  xifti,
  structural_img = "MNI",
  idx = 1,
  plane = c("axial", "sagittal", "coronal"),
  num.slices = 9,
  use_papaya = FALSE,
  z_min = NULL,
  z_max = NULL,
  verbose = TRUE,
  ...
)
viewcii_volume(
  xifti,
  structural_img = "MNI",
  idx = 1,
  plane = c("axial", "sagittal", "coronal"),
  num.slices = 9,
  use_papaya = FALSE,
  z_min = NULL,
  z_max = NULL,
  verbose = TRUE,
  ...
)

Arguments

xifti

Object of class "xifti". See is.xifti and make_xifti.

structural_img

The structural MRI image on which to overlay the subcortical values. Can be a file name, "MNI" (default) to use the MNI T1-weighted template, or NULL to use a blank image.

idx

The time/column index of the "xifti" data to plot.

plane

If use_papaya=FALSE, the plane to display. Default: "axial". Other options are "sagittal" and "coronal".

num.slices

If use_papaya=FALSE, the number of slices to display. Default: 9.

use_papaya

use_papaya=TRUE will use papayar to allows for interactive visualization.

z_min

Floor value.

z_max

Ceiling value.

verbose

Should occasional updates be printed? Default: TRUE.

...

Additional arguments to pass to papayar::papaya or oro.nifti::overlay