This function writes trees in a file with the NEXUS format.
write.nexus(..., file = "", translate = TRUE)
either (i) a single object of class "phylo"
, (ii) a
series of such objects separated by commas, or (iii) a list
containing such objects.
a file name specified by either a variable of mode character,
or a double-quoted string; if file = ""
(the default) then the
tree is written on the standard output connection.
a logical, if TRUE
(the default) a translation
of the tip labels is done which are replaced in the parenthetic
representation with tokens.
None (invisible `NULL').
If several trees are given, they must all have the same tip labels.
If among the objects given some are not trees of class "phylo"
,
they are simply skipped and not written in the file.
Maddison, D. R., Swofford, D. L. and Maddison, W. P. (1997) NEXUS: an extensible file format for systematic information. Systematic Biology, 46, 590--621.
read.nexus
, read.tree
,
write.tree
, read.nexus.data
,
write.nexus.data