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AGDEX (version 1.18.0)

Agreement of Differential Expression Analysis

Description

A tool to evaluate agreement of differential expression for cross-species genomics

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Version

Version

1.18.0

License

GPL Version 2 or later

Maintainer

Cuilan lani Gao

Last Published

February 15th, 2017

Functions in AGDEX (1.18.0)

map.data

Probe-set Mapping Data
mouse.data

Mouse Data
agdex.res

Saved result returned by agdex()
agdex.scatterplot

scatter plot of AGDEX result
human.data

Sample ExpressionSet object of human data
make.dex.set.object

Make a list object for function agdex()
read.agdex.gset.details

read detailed results of gene-set analyses
read.agdex.result

Read the output file of agdex analysis
get.gset.result.details

Extract gene-level details from gene-set results
gset.data

a sample gene-set data
write.agdex.gset.details

write the output of get.gset.result.details to a tab-delimited text file.
AGDEX-package

Agreement of differential expression analysis
agdex

Agreement of Differential Expression Analysis
write.agdex.result

Write the AGDEX results to output file