plot_probabilities

Parentage assignment package.
Parentage assignment is performed based on observed average Mendelian transmission probability distributions or Exclusion.
The main functions of this package are the function APIS_2n(), APIS_3n() and launch_APIShiny(), which perform parentage assignment.

Julien Roche

APIS

Auto-Adaptive Parentage Inference Software Tolerant to Missing
Parents

Ronan Griot

Mathieu Besson

François Allal

Marc Vandeputte

Jonathan D'Ambrosio

Romain Morvezin

Florence Phocas

Sophie Brard-Fudulea

Pierrick Haffray

plot_probabilities function

<dl><dt>log_file</dt>
<dd>log file from the APIS_2n() or APIS_3n function</dd>
<dt>threshold</dt>
<dd>threshold</dd>
<dt>simulated_individuals</dt>
<dd>names of the simulated individuals</dd></dl>

Arguments

Plot probabilities — plot_probabilities

<dl>

<dt>log_file</dt>
<dd>log file from the APIS_2n() or APIS_3n function</dd>


<dt>threshold</dt>
<dd>threshold</dd>


<dt>simulated_individuals</dt>
<dd>names of the simulated individuals</dd>

</dl>

Plot probabilities

plot_probabilities: Plot probabilities

Description

Usage

Value

Arguments