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APIS (version 2.0.7)

Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

Description

Parentage assignment package. Parentage assignment is performed based on observed average Mendelian transmission probability distributions or Exclusion. The main functions of this package are the function APIS_2n(), APIS_3n() and launch_APIShiny(), which perform parentage assignment.

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Version

Install

install.packages('APIS')

Monthly Downloads

758

Version

2.0.7

License

GPL

Maintainer

Julien Roche

Last Published

October 2nd, 2024

Functions in APIS (2.0.7)

APIS_offspring3n

Example offspring 3n genotypes
APIS_3n

APIS for triploids
plot_probabilities

Plot probabilities
APIS_2n

APIS for diploids
simulate_offspring

Simulate offspring
plot_delta

Plot deltas
import_from_vcf

Import from .vcf
launch_APIShiny

Shiny App for interactive session of APIS
plot_mismatches

Plot mismatches
assignment_power

Assignment power
import_from_ped

Import from Plink .ped
APIS_sire

Example sire genotypes
APIS_offspring

Example offspring genotypes
APIS_dam

Example dam genotypes