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ASPBay (version 1.2)

Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data

Description

This package allows to make inference on the properties of causal genetic variants in linkage disequilibrium with genotyped markers. In a first step, we select a subset of variants using a score statistic for affected sib-pairs. In a second step, on the selected subset, we make inference on causal genetic variants in the considered region.

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Version

Install

install.packages('ASPBay')

Monthly Downloads

37

Version

1.2

License

GPL-2

Maintainer

Claire DandineRoulland

Last Published

January 14th, 2015

Functions in ASPBay (1.2)

ASPData

Simulated dataset
Graphs.Bayesian

Graphs
ASPBay-package

Bayesian method with affected sib pairs
ASP.Bayesian

Samples in the posterior distribution of the frequencies and OR
ASP.Selection

Select a subset of SNPs
ASP.Score

Score test of association
ASP.Bayesian

Samples in the posterior distribution of the frequencies and OR
ASP.Score

Score test of association