Ac3net (version 1.2.2)

Ac3net.getDirectedOrDualLinks: Find the unique directed or dual links in the network.

Description

Ac3net.getDirectedOrDualLinks takes a network list matrix and returns a unique network; either directionals or the duals.

Usage

Ac3net.getDirectedOrDualLinks(net1, dual_=FALSE)

Arguments

net1

A matrix that represents the links between two variables at each row. Namely, the element at row i and column 1 and the element at row i and column 2 are assumed to be paired or linked. There is no connection assumed among rows.

dual_

It is FALSE by default, which means there is directionality assumed from column 1 to column 2 at each matrices. A--B and B--A is cases filtered out. If TRUE, then only the dual pairs selected.

Value

Ac3net.getDirectedOrDualLinks returns a unique network matrix.

Details

Ac3net.getDirectedOrDualLinks takes a network list matrix and returns a unique network; either directionals or the duals. If directed=TRUE then it is the unique pairs from column 1 to column 2. If directed=FALSE then it is the unique dual pairs (selects if and only if A--B and B--A exist). directional or undirectional common pairs between the two regarding the first two columns of the networks.

References

G. Altay,"Directed Conservative Causal Core Gene Networks", bioRxiv, 2018. G. Altay, F. Emmert-Streib, "Inferring the conservative causal core of gene regulatory networks", BMC Systems Biology (2010) 4:132.

See Also

Ac3net.maxmim, Ac3net.cutoff,

Examples

# NOT RUN {
# net1
# net <-  Ac3net.getDirectedOrDualLinks(net1, dual_=FALSE)
# }