Ac3net (version 1.2.2)

Inferring Directional Conservative Causal Core Gene Networks

Description

Infers directional conservative causal core (gene) networks. It is an advanced version of the algorithm C3NET by providing directional network. Gokmen Altay (2018) , bioRxiv.

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Version

Install

install.packages('Ac3net')

Monthly Downloads

299

Version

1.2.2

License

GPL (>= 3)

Maintainer

Gokmen Altay

Last Published

February 26th, 2018

Functions in Ac3net (1.2.2)

Ac3net.getDirectedOrDualLinks

Find the unique directed or dual links in the network.

Ac3net.maxmim

Find the maximum valued partner of each variable.

Ac3net.commonlinks

Find the common links between the network lists.

Ac3net.cutoff

Calculates a quick cutoff value from an adjacency matrix

Ac3net.filtersames

The correlations of the same variables are set to zero.

Ac3net.getDifferentLinks

Find the different links between the network lists.

Ac3net.MTC

Return adjusted p-values of the adjancency matrix.

Ac3net

Implement Ac3net algorithm with a single function.

truenet

The known intreactions of E.coli from RegulonDB database.

zeroindx

The indices to force to zero correlations.

Ac3net.performance

Find the performance of the first network based on the second.

expdata

Real E.coli Gene Expression Dataset