Ac3net (version 1.2.2)

zeroindx: The indices to force to zero correlations.

Description

The indices to force to zero correlations of E.coli expresseion data. Because REgulonDB database provided only TF-TF or TF-gene interactions. We need to remove gene-gene interactions before the performance analysis.

Usage

data("zeroindx")

Details

The indices to force to zero correlations of E.coli expresseion data. Because REgulonDB database provided only TF-TF or TF-gene interactions. We need to remove gene-gene interactions before the performance analysis. These indice are also from (Faith, 2007), available along with the expression data.

References

Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol. 2007 Jan;5(1):e8

Examples

# NOT RUN {
#data(zeroindx)

# }