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AffyCompatible (version 1.30.0)

Affymetrix GeneChip software compatibility

Description

This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.

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Version

Version

1.30.0

License

Artistic-2.0

Maintainer

Martin Morgan

Last Published

February 15th, 2017

Functions in AffyCompatible (1.30.0)

AffyCompatible-package

Affymetrix chip annotation and sample attribute management
readMage

Read DTT (MAGE) sample attribute files
NetAffxResource

Create and access a NetAffxResource database
AffyCompatible-class

Virtual classes defining the "AffyCompatibility" hierarchy
xclass

(Advanced) Construct R objects from XML document queries
readNetAffx

Update or read a NetAffx data base
accessors

Access NetAffxResource-class content
readArr

Read ARR sample attribute files
NetAffxResource-class

Manage NetAffx annotations
readXml

(Advanced) Read XML files of Affymetrix sample attriubtes or annotation
Internal-class

(Internal) Represent 'typed associations' from XML documents
zzz-ARRCompatibility-class

(Auto-generated) classes and methods for navigating ARR sample attributes.
xmlValue.XMLAttributeValue

Additional functions defined in AffyCompatible
zzz-NetAffxCompatibility-class

(Auto-generated) classes and methods for navigating NetAffx resources
zzz-DTTCompatibility-class

(Auto-generated) classes and methods for navigating DTT sample attributes.