The function calculates and by defaults plots the acf and estimates the autocorrelation in the trace
acfCSP(
parameter,
csp = "Mutation",
numMixtures = 1,
samples = NULL,
lag.max = 40,
plot = TRUE
)
object of class Parameter
indicates which parameter to calculate the autocorrelation. Must be Mutation (the default, ROC, FONSE), Selection (ROC, FONSE), Alpha (PA, PANSE), LambdaPrime (PA, PANSE), NSERate (PA, PANSE)"
indicates the number of CSP mixtures used
number of samples at the end of the trace used to calculate the acf
Maximum amount of lag to calculate acf. Default is 10*log10(N), where N i the number of observations.
logical. If TRUE (default) a plot of the acf is created