Plots different traces, specified with the what
parameter.
# S3 method for Rcpp_Trace
plot(
x,
what = c("Mutation", "Selection", "MixtureProbability", "Sphi", "Mphi", "Aphi",
"Sepsilon", "ExpectedPhi", "Expression", "NSEProb", "NSERate", "InitiationCost",
"PartitionFunction"),
geneIndex = 1,
mixture = 1,
log.10.scale = F,
...
)
An Rcpp trace object initialized with initializeTraceObject
.
A string containing one of the following to graph: Mutation, Selection, Alpha, LambdaPrime, MeanWaitingTime, VarWaitingTime
MixtureProbability, Sphi, Mphi, Aphi, Spesilon, ExpectedPhi, Expression
.
When plotting expression, the index of the gene to be plotted.
The mixture for which to plot values.
A logical value determining if figures should be plotted on the log.10.scale (default=F). Should not be applied to mutation and selection parameters estimated by ROC/FONSE.
Optional, additional arguments. For this function, may be a logical value determining if the trace is ROC-based or not.
This function has no return value.