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AnnotationDbi (version 1.28.2)

Annotation Database Interface

Description

Provides user interface and database connection code for annotation data packages using SQLite data storage.

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Version

Version

1.28.2

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in AnnotationDbi (1.28.2)

BimapFormatting

Formatting a Bimap as a list or character vector
ACCNUM

Descriptions of available values for columns and keytypes.
make_eg_to_go_map

Create GO to Entrez Gene maps for chip-based packages
makeGOGraph

A convenience function to generate graphs based on the GO.db package
Bimap-direction

Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys
Bimap-envirAPI

Environment-like API for Bimap objects
inpIDMapper

Convenience functions for mapping IDs through an appropriate set of annotation packages
KEGGFrame

KEGGFrame objects
AnnDbPkg-checker

Check the SQL data contained in an SQLite-based annotation package
createSimpleBimap

Creates a simple Bimap from a SQLite database in an situation that is external to AnnotationDbi
AnnDbObj-objects

AnnDbObj objects
AnnotationDbi-defunct

Defunct Functions in package AnnotationDbi
unlist2

A replacement for unlist() that does not mangle the names
Bimap-keys

Methods for manipulating the keys of a Bimap object
Bimap-toTable

Methods for manipulating a Bimap object in a data-frame style
GOTerms-class

Class "GOTerms"
HOMO_SAPIENS

Descriptions of available values for columns and keytypes for inparanpoid packages.
Bimap

Bimap objects and the Bimap interface
print.probetable

Print method for probetable objects
toggleProbes

Methods for getting/setting the filters on a Bimap object
toSQLStringSet

Convert a vector to a quoted string for use as a SQL value list
GOID

Descriptions of available values for columns and keytypes for GO.db.
AnnotationDb-objects

AnnotationDb objects and their progeny, methods etc.
AnnotationDbi internals

AnnotationDbi internals
GOFrame

GOFrame and GOAllFrame objects