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AnnotationDbi (version 1.30.1)
Annotation Database Interface
Description
Provides user interface and database connection code for annotation data packages using SQLite data storage.
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Version
1.34.4
1.34.3
1.32.0
1.30.1
1.28.2
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Version
1.30.1
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in AnnotationDbi (1.30.1)
Search functions
AnnDbPkg-checker
Check the SQL data contained in an SQLite-based annotation package
Bimap-keys
Methods for manipulating the keys of a Bimap object
toggleProbes
Methods for getting/setting the filters on a Bimap object
Bimap-direction
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys
AnnDbObj-objects
AnnDbObj objects
AnnotationDb-objects
AnnotationDb objects and their progeny, methods etc.
Bimap
Bimap objects and the Bimap interface
AnnotationDbi internals
AnnotationDbi internals
Bimap-toTable
Methods for manipulating a Bimap object in a data-frame style
Bimap-envirAPI
Environment-like API for Bimap objects
GOFrame
GOFrame and GOAllFrame objects
GOID
Descriptions of available values for
columns
and
keytypes
for GO.db.
BimapFormatting
Formatting a Bimap as a list or character vector
AnnotationDbi-defunct
Defunct Functions in package
AnnotationDbi
inpIDMapper
Convenience functions for mapping IDs through an appropriate set of annotation packages
ACCNUM
Descriptions of available values for
columns
and
keytypes
.
HOMO_SAPIENS
Descriptions of available values for
columns
and
keytypes
for inparanpoid packages.
KEGGFrame
KEGGFrame objects
createSimpleBimap
Creates a simple Bimap from a SQLite database in an situation that is external to AnnotationDbi
GOTerms-class
Class "GOTerms"
makeGOGraph
A convenience function to generate graphs based on the GO.db package
make_eg_to_go_map
Create GO to Entrez Gene maps for chip-based packages
print.probetable
Print method for probetable objects
unlist2
A replacement for unlist() that does not mangle the names
toSQLStringSet
Convert a vector to a quoted string for use as a SQL value list