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AnnotationDbi (version 1.32.0)

Annotation Database Interface

Description

Provides user interface and database connection code for annotation data packages using SQLite data storage.

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Version

Version

1.32.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in AnnotationDbi (1.32.0)

Bimap-direction

Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys
Bimap-envirAPI

Environment-like API for Bimap objects
HOMO_SAPIENS

Descriptions of available values for columns and keytypes for inparanpoid packages.
inpIDMapper

Convenience functions for mapping IDs through an appropriate set of annotation packages
makeGOGraph

A convenience function to generate graphs based on the GO.db package
print.probetable

Print method for probetable objects
KEGGFrame

KEGGFrame objects
make_eg_to_go_map

Create GO to Entrez Gene maps for chip-based packages
toSQLStringSet

Convert a vector to a quoted string for use as a SQL value list
AnnotationDb-objects

AnnotationDb objects and their progeny, methods etc.
AnnotationDbi internals

AnnotationDbi internals
BimapFormatting

Formatting a Bimap as a list or character vector
ACCNUM

Descriptions of available values for columns and keytypes.
unlist2

A replacement for unlist() that does not mangle the names
AnnDbObj-objects

AnnDbObj objects
AnnDbPkg-checker

Check the SQL data contained in an SQLite-based annotation package
Bimap

Bimap objects and the Bimap interface
Bimap-keys

Methods for manipulating the keys of a Bimap object
GOFrame

GOFrame and GOAllFrame objects
GOTerms-class

Class "GOTerms"
Bimap-toTable

Methods for manipulating a Bimap object in a data-frame style
toggleProbes

Methods for getting/setting the filters on a Bimap object
GOID

Descriptions of available values for columns and keytypes for GO.db.
createSimpleBimap

Creates a simple Bimap from a SQLite database in an situation that is external to AnnotationDbi